Population-Probability Atlas and Tract-to-Region Connectome (Yeh, 2022)

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Citation: Yeh, FC. Population-based tract-to-region connectome of the human brain and its hierarchical topology. Nat Commun 13, 4933 (2022). https://doi.org/10.1038/s41467-022-32595-4

License: Creative Commons Attribution-ShareAlike 4.0 International License.

The population-based tractography atlases and associated tract-to-region connectome were constructed using HCP young adult data.

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Data Format Note
HCP-1065 probabilistic tract atlas (volume) NIFTI The voxel probability of tracts. This probabilistic tractography atlas was aggregated from 1065 subject’s tractogram in the ICBM 2009a Nonlinear Asymmetric space. Automatic fiber tracking and augmented fiber tracking (Yeh 2020) were used to map white matter pathways in HCP young adult subjects. These NIFTI volumes record the population probability of each white matter tract aggregated from the tractography of 1065 subjects.
HCP-1065 probabilistic tract atlas figures TIF The voxel probability of tracts
1065 subjects’ 52 tracts (volume) NIFTI NIFTI files of 1065 subjects x 52 tracts in ICBM-152 space. Automatic fiber tracking and augmented fiber tracking (Yeh 2020) was applied to each of the HCP 1065 subjects data to map white matter pathways.
Tract-to-region connectome (HCP-MMP parcellation) Excel Tract-to-region connectome was derived using HCP-MMP parcellations.
Tract-to-region connectome (Brodmann and Kleist parcellation) Excel Tract-to-region connectome was derived using Brodmann and Kleist parcellations.
Scripts   Scripts to generate figures in the Yeh Nat. Comm. 2022 paper
Abbreviations Excel  

HCP1065 Population-Averaged Tractography Atlas (Yeh, 2022)

Citation: Yeh, FC. Population-based tract-to-region connectome of the human brain and its hierarchical topology. Nat Commun 13, 4933 (2022). https://doi.org/10.1038/s41467-022-32595-4

License: Creative Commons Attribution-ShareAlike 4.0 International License.

The data are derived from imaging data of the Human Connectome Project. Using them requires additional acknowledgment.

The HCP1065 tractography atlas is an updated version of the previous HCP842 (Yeh 2018) to the ICBM 2009a Nonlinear Asymmetric space

The HCP1065 Yeh 2022 atlas further provides subcomponents for the cingulum, SLF, corticopontine track, corticostriatal track, and corticothalamic track (renamed as thalamic radiation). 

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Data Format Note
HCP1065 Population-averaged tractography atlas (streamlines) TT To view these tract files, please download the HCP-1065 template fib file and open it in DSI Studio at [Step T3 Fiber Tracking]. The *.tt.gz files can be loaded using [Tracts][Open Tracts]. The ICBM152 images can be loaded using [Edit][Insert T1W/T2W].
HCP1065 Population-averaged tractography atlas (streamlines) TRK  
HCP1065 Population-averaged tractography atlas (volume) NIFTI  
Tract Abbreviations  Excel  

HCP842 Population-Averaged Tractography Atlas (Yeh, 2018)

Citation: Yeh FC, Panesar S, Fernandes D, Meola A, Yoshino M, Fernandez-Miranda JC, Vettel JM, Verstynen T. Population-averaged atlas of the macroscale human structural connectome and its network topology. Neuroimage. 2018 Sep 1;178:57-68.(original data)

License: Creative Commons Attribution-ShareAlike 4.0 International License.

The data are derived from imaging data of the Human Connectome Project. Using them requires additional acknowledgment.

The HCP842 tractography atlas uses FSL’s FA map, which averaged from 58 FA images in the MNI152 coordinate. 

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Data Format Note
HCP842 Population-averaged tractography atlas (streamline) TRK  
HCP842 Population-averaged tractography atlas (volume) NIFTI  
HCP842 Population-averaged tractography atlas (figure) JPG  
HCP842 Connectivity matrix (EXCEL) and connectograms in (PNG) Excel PNG  
HCP842 Abbreviations PDF