OpenNeuro Preprocessed Data

OpenNeuro is a free, open platform and a BRAIN Initiative designated data archive for sharing human and non-human brain imaging data. Hosted by the Stanford Center for Reproducible Neuroscience, it aims to enhance the transparency and reproducibility of scientific research by providing openly available datasets under a Creative Commons CC0 license, which places minimal restrictions on data reuse. Key features of OpenNeuro include:

Data Types: The archive hosts a broad range of data, including functional and structural MRI, diffusion MRI, EEG, and MEG. Standardization: All uploaded data must adhere to the community-developed Brain Imaging Data Structure (BIDS) standard, which ensures consistent organization and metadata across datasets, making them easily reusable with various analysis tools. Accessibility: Datasets can be accessed and downloaded via a web browser, a command-line interface, or the DataLad versioning system. Integration: OpenNeuro partners with platforms like Brainlife.io to enable cloud-based analysis and visualization of the stored data.

Download Commmand

Download ds004640 preprocessed DWI data

curl -s https://api.github.com/repos/data-openneuro/disease/releases/tags/ds004640 | jq -r '.assets[].browser_download_url' | xargs -n1 -P4 curl -LO

(Invoke-RestMethod "https://api.github.com/repos/data-openneuro/disease/releases/tags/ds004640").assets | ForEach-Object { Invoke-WebRequest $_.browser_download_url -OutFile (Split-Path $_.browser_download_url -Leaf) }

Included DWI Datasets

DS NUMBER DWI COUNT Original Page
ds001919 261 Spinal Cord MRI Public Database (Multi-subjects)
ds002087 1 Datasets with and without deliberate head movements for detection and imputation of dropout in diffusion MRI
ds002374 1 3AM straight reproducibility phantoms
ds002393 19 Spinal Cord MRI Public Database
ds003563 4 Data from: Comprehensive ultrahigh resolution whole brain in vivo MRI dataset as a human phantom
ds004640 2 Sustaining wakefulness: Brainstem connectivity in human consciousness
ds006187 2 Connectome 2.0 Diffusion MRI (ex vivo)