OpenNeuro Preprocessed Data

OpenNeuro is a free, open platform and a BRAIN Initiative designated data archive for sharing human and non-human brain imaging data. Hosted by the Stanford Center for Reproducible Neuroscience, it aims to enhance the transparency and reproducibility of scientific research by providing openly available datasets under a Creative Commons CC0 license, which places minimal restrictions on data reuse. Key features of OpenNeuro include:

Data Types: The archive hosts a broad range of data, including functional and structural MRI, diffusion MRI, EEG, and MEG. Standardization: All uploaded data must adhere to the community-developed Brain Imaging Data Structure (BIDS) standard, which ensures consistent organization and metadata across datasets, making them easily reusable with various analysis tools. Accessibility: Datasets can be accessed and downloaded via a web browser, a command-line interface, or the DataLad versioning system. Integration: OpenNeuro partners with platforms like Brainlife.io to enable cloud-based analysis and visualization of the stored data.

Download Commmand

Download ds001226 preprocessed DWI data

curl -s https://api.github.com/repos/data-openneuro/disease/releases/tags/ds001226 | jq -r '.assets[].browser_download_url' | xargs -n1 -P4 curl -LO
(Invoke-RestMethod "https://api.github.com/repos/data-openneuro/disease/releases/tags/ds001226").assets | ForEach-Object { Invoke-WebRequest $_.browser_download_url -OutFile (Split-Path $_.browser_download_url -Leaf) }

Included DWI Datasets

DS NUMBER DWI COUNT Original Page
ds001226 36 BTC_preop
ds001378 50 SCA2 Diffusion Tensor Imaging
ds001743 12 Unilateral Glaucoma 3T dMRI
ds001907 16 ANT: Healthy aging and Parkinson’s disease
ds001928 40 Functional Connectivity of Music-Induced Analgesia in Fibromyalgia
ds002080 29 BTC_postop
ds003037 149 SUDMEX_TMS: The Mexican dataset of an rTMS clinical trial on cocaine use disorder patients.
ds003367/ 49 Ascending arousal network connectivity during recovery from traumatic coma
ds003346/ 136 SUDMEX_CONN: The Mexican dataset of cocaine use disorder patients.
ds003599/ 133 White matter deficits in cocaine use disorder V1.0
ds004498/ 7 Perinatal Stroke
ds004717/ 42 Utilizing Amide Proton Transfer Technique to Characterise Diffuse Gliomas Based on WHO 2021 Classification of CNS Tumors
ds004884/ 613 Aphasia Recovery Cohort (ARC) Dataset
ds004889/ 1715 Stroke Outcome Optimization Project (SOOP)
ds004910/ 134 An open relaxation-diffusion MRI dataset in neurosurgical studies
ds005026/ 82 Hearing loss Connectome
ds005063/ 1 CR DBS