OpenNeuro Preprocessed Data

OpenNeuro is a free, open platform and a BRAIN Initiative designated data archive for sharing human and non-human brain imaging data. Hosted by the Stanford Center for Reproducible Neuroscience, it aims to enhance the transparency and reproducibility of scientific research by providing openly available datasets under a Creative Commons CC0 license, which places minimal restrictions on data reuse. Key features of OpenNeuro include:

Data Types: The archive hosts a broad range of data, including functional and structural MRI, diffusion MRI, EEG, and MEG. Standardization: All uploaded data must adhere to the community-developed Brain Imaging Data Structure (BIDS) standard, which ensures consistent organization and metadata across datasets, making them easily reusable with various analysis tools. Accessibility: Datasets can be accessed and downloaded via a web browser, a command-line interface, or the DataLad versioning system. Integration: OpenNeuro partners with platforms like Brainlife.io to enable cloud-based analysis and visualization of the stored data.

Download Commmand

Download ds001226 preprocessed DWI data

curl -s https://api.github.com/repos/data-openneuro/disease/releases/tags/ds001226 | jq -r '.assets[].browser_download_url' | xargs -n1 -P4 curl -LO
(Invoke-RestMethod "https://api.github.com/repos/data-openneuro/disease/releases/tags/ds001226").assets | ForEach-Object { Invoke-WebRequest $_.browser_download_url -OutFile (Split-Path $_.browser_download_url -Leaf) }

Included DWI Datasets

DS NUMBER DWI COUNT Original Page
ds001226 36 BTC_preop
ds001378 50 SCA2 Diffusion Tensor Imaging
ds001743 12 Unilateral Glaucoma 3T dMRI
ds001907 16 ANT: Healthy aging and Parkinson’s disease
ds001928 40 Functional Connectivity of Music-Induced Analgesia in Fibromyalgia
ds002080 29 BTC_postop
ds003037 149 SUDMEX_TMS: The Mexican dataset of an rTMS clinical trial on cocaine use disorder patients.
ds003367 49 Ascending arousal network connectivity during recovery from traumatic coma
ds003346 136 SUDMEX_CONN: The Mexican dataset of cocaine use disorder patients.
ds003599 133 White matter deficits in cocaine use disorder V1.0
ds004498 7 Perinatal Stroke
ds004717 42 Utilizing Amide Proton Transfer Technique to Characterise Diffuse Gliomas Based on WHO 2021 Classification of CNS Tumors
ds004884 613 Aphasia Recovery Cohort (ARC) Dataset
ds004889 1715 Stroke Outcome Optimization Project (SOOP)
ds004910 134 An open relaxation-diffusion MRI dataset in neurosurgical studies
ds005026 82 Hearing loss Connectome
ds005063 1 CR DBS
ds005874 232 An fMRI Dataset for Appetite Neural Correlates in People Living with Motor Neuron Disease