OpenNeuro Preprocessed Data

OpenNeuro is a free, open platform and a BRAIN Initiative designated data archive for sharing human and non-human brain imaging data. Hosted by the Stanford Center for Reproducible Neuroscience, it aims to enhance the transparency and reproducibility of scientific research by providing openly available datasets under a Creative Commons CC0 license, which places minimal restrictions on data reuse. Key features of OpenNeuro include:

Data Types: The archive hosts a broad range of data, including functional and structural MRI, diffusion MRI, EEG, and MEG. Standardization: All uploaded data must adhere to the community-developed Brain Imaging Data Structure (BIDS) standard, which ensures consistent organization and metadata across datasets, making them easily reusable with various analysis tools. Accessibility: Datasets can be accessed and downloaded via a web browser, a command-line interface, or the DataLad versioning system. Integration: OpenNeuro partners with platforms like Brainlife.io to enable cloud-based analysis and visualization of the stored data.

Download Commmand

Download ds001875 preprocessed DWI data

curl -s https://api.github.com/repos/data-openneuro/disease/releases/tags/ds001875 | jq -r '.assets[].browser_download_url' | xargs -n1 -P4 curl -LO

(Invoke-RestMethod "https://api.github.com/repos/data-openneuro/disease/releases/tags/ds001875").assets | ForEach-Object { Invoke-WebRequest $_.browser_download_url -OutFile (Split-Path $_.browser_download_url -Leaf) }

Included DWI Datasets

DS NUMBER DWI COUNT Original Page
ds001875 9 TheVirtualBrain Macaque MRI
ds002307 19 individual_dMRI_fMRI
ds002374 1 3AM straight reproducibility phantoms
ds003027 36 plp_nf1_dMRI_fMRI
ds003959/ 12 Soma and Neurite Density MRI (SANDI) of the in-vivo mouse brain
ds003989/ 3 Structural, diffusion and rs-functional MRI data in Macaque Monkeys
ds004161/ 48 Turone Sheep Chronic Stress (TSCS)
ds004305/ 32 Mapping neuroinflammation in vivo with diffusion-MRI in rats given a systemic lipopolysaccharide challenge
ds004441/ 28 Rat_diffusion_STZ
ds004632/ 27 DTI readouts for designing a preclinical stem-cell therapy trial in experimental stroke
ds004962/ 28 MRI dataset evaluating the effect of head down tilt 15° on cerebral perfusion in acute ischemic experimental stroke
ds005236/ 59 Effects of environmental enrichment on brain microstructure in C58 mice (adult cohort)
ds005402/ 34 MPTP mouse